PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G047800.1
Common NameB456_005G047800, LOC105796706
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 172aa    MW: 19227.8 Da    PI: 8.6268
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G047800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000142244123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C + F++   L  H+++H
  Gorai.005G047800.1 22 YTCSFCERGFRSAQALGGHMNVH 44
                        9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.45E-71949No hitNo description
Gene3DG3DSA:3.30.160.602.4E-42048IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.1E-52245IPR007087Zinc finger, C2H2
SMARTSM003550.0072244IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.4062249IPR007087Zinc finger, C2H2
PROSITE patternPS0002802444IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MATNQGFEED YLSGFSWPPR SYTCSFCERG FRSAQALGGH MNVHRRDKAR LRQLPPPMDH  60
HGQSPFLNLN LNLNFNPNPN FSSSSLVSSP LPCEMKKRLV NETVVDSTDS TSMKGAKPLF  120
GVKEFKDYGC NNKFMKKKKK NVSLDLGLDL EMGVGSDSKE DLDLELRLGY T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-131744229superman protein
2l1o_A3e-131744229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012481950.11e-125PREDICTED: transcriptional regulator SUPERMAN-like isoform X1
TrEMBLA0A0D2N7Z41e-125A0A0D2N7Z4_G
STRINGGSMUA_Achr11P02160_0018e-35(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81092432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.12e-24C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]